rs29559763 SNP Detail

Summary

• ID
  rs29559763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90373418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GAAAGTGTGT CTATGTGTTG
  R
  GCCTTTTGAA GGCAGAGTTG GGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45335481	mCV24351465	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146920514	ENSMUSSNP4511193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			G
ss320390967	CHEV_2_90383231	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29559763					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90373418 () rs orientation: forward

Symbol	Name	Function Class
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	90 bp downstream
Rr560526	regulatory region 560526	within coordinates
Rr560527	regulatory region 560527	1016 bp proximal
Tssr25105	transcription start site region 25105	246 bp upstream