rs29558651 SNP Detail

Summary

• ID
  rs29558651
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38685591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG CTCTGGCTGT ACTCGACAGA
  M
  ATGACAGCCA TGCTCTAAAC ACCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45834692	mCV22717183	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss148266576	ENSMUSSNP4613040	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321518761	CHEV_5_38919487	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29558651					SNP	A	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38685591 () rs orientation: forward

Symbol	Name	Function Class
Rr610556	regulatory region 610556	1644 bp proximal
Tssr50807	transcription start site region 50807	1035 bp upstream
Tssr50808	transcription start site region 50808	951 bp upstream
Tssr50809	transcription start site region 50809	555 bp upstream
Wdr1	WD repeat domain 1	Intron