rs29557842 SNP Detail

Summary

• ID
  rs29557842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:74409813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG TCTCATCCTG CTCTTTCCAG
  Y
  CCCACCCAGC CCTTGCTGTG GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39587099	mCV23436903	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147470867	ENSMUSSNP3850744	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325687353	CHEV_18_74436396	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29557842					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:74409813 () rs orientation: forward

Symbol	Name	Function Class
Gm58866	predicted gene, 58866	within coordinates
Mbd1	methyl-CpG binding domain protein 1	Intron