rs29557793 SNP Detail

Summary

• ID
  rs29557793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169507021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGCTGAGAC CAGAGGATTG CAAGTTCCAA TCTTACTCGA GTTACAGAGT GAATTCAAGG
  CTACCCTAGG TGACTTGAGC AGACCCTATC CCAAAATTAA AATAAAAGGC TTGATGGAGG
  GGGGGAGGAG TGGGTACAGC TCACTTGTAG AGCAATTGCC CCCACATGCA CAAGGTCCTA
  CACACACACA CACACATGCA CAAAGACACA CACAGAGAGA AAGACAGAGA CTAAGACACA
  CAGCGAGAAA CAGTGACAAA GAAAAAGACA AGAGACAGAG GGACAGACAG ACAGACAAAT
  K
  GGGGGGGGGA TAATGAGACA AGTGCTCAGG GCAGCAGTGA AGCAGTTTTG CCACACATGC
  TCTTGCAGTT AGAACTCTGT GCCTACCTAG CTGGGAGCAT CAGGTCCGGG AACCCAGGTC
  TTACCCATGC TGGCTGAGCC CTGAGCATGG CATGCTCCAC CCAGCACTGG TTTGGTACAG
  AAGCCAGCCT GGACGTAAAC CAGAAACCAA AGGGAGAAGG CCTGTCTTCT ATCAGGCTGC
  CTTCATCTTT CTAACAGCTG GAACTATCAT TCTTTCCATT GTGCTAGCAA ATAAACTAAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45336728	mCV23016940	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss148289159	ENSMUSSNP2284706	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29557793					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169507021 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	509 bp downstream
Rr571229	regulatory region 571229	399 bp distal
Rr571230	regulatory region 571230	1118 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	163 bp downstream