rs29557593 SNP Detail

Summary

• ID
  rs29557593
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104514630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AACTAGAACA GAGAGGGGAA
  M
  GAGGAGCAGG AGACCAAGGG ATGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45336045	mCV22339882	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss147152748	ENSMUSSNP5591128	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320445319	CHEV_2_104524442	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29557593					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104514630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	1035 bp proximal
Rr562107	regulatory region 562107	1301 bp proximal
Tcp11l1	t-complex 11 like 1	Intron