rs29556987 SNP Detail

Summary

• ID
  rs29556987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148216517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGTACC CAATCCACCT
  TTCTCTTTGT CTTAACGATG GTACTATTGA TGTGGTTCTA CACGTGCTCA GTAGAGAGTT
  CCAGGCAATG AATTCAAATA TGAGGCTACT AAGAAAATAG TTCAGAAGGA AAATCTGGAT
  TTATTTGAAC GTAGGGATTA ACTCTGGAAC CTGTTAGGAA GCTTCTTTAC CATTGACCTA
  Y
  ATCCTCCGTC TTTTTGTTTA AATTACTTTT TTACTTAGGG ACAAGAAATT CTCATTCTGT
  CCAGGTTGGT CTTGAACTTG GTATCACAAT CAATCCAAAC TTATGATCCT TCTACCCCAA
  CCAGTAGCTG GGATTTCAGG TCCATACTCC GAAGCCCAGT AAGAAAATCT GAATTTATTA
  AACGTATAAT ATCTTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45337802	mCV24014783	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147923736	ENSMUSSNP2755754	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29556987					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148216517 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	1733 bp downstream
Rr566886	regulatory region 566886	355 bp distal
Rr566887	regulatory region 566887	828 bp proximal
Rr566888	regulatory region 566888	913 bp proximal
Rr566889	regulatory region 566889	1294 bp proximal