rs29556322 SNP Detail

Summary

• ID
  rs29556322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152660876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGTCTC AAAACAAAAC
  CAAAACCCCC AGACCTTTTG TGTTGAAGAC ATGGTCCCTA ATGCAACAGT GTTCTGACGC
  AGGATCTTCA GGAAGGTAAT TGGATGCACT CCGAGTGCAG GGCAGTCAAG CGTTTACTGA
  CTGACTGGGC TCAAACCATT TTATTCAGAG GCTTGAAAGG TCTGCTCAAC CTGCTAGCCC
  Y
  GGCATGGCAA ATATTCCAGA CCTCTTCTCA TCATTAAAGA GCAAATTCGT AACTTAATGG
  GCTTTGGGCA ATAGGAAGCA AATCACTAGG GGCACACAGT GGTGGGCACA TTCTTTTCCT
  AGTTCCCTCT CTTGTCACTG GCTTCCTTGA TGCCATAAGA TAAGCAACTC TGCTTCACCA
  TTTATGGGCC ATAAAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45335724	mCV27575771	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147974936	ENSMUSSNP2285223	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29556322					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152660876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			759 bp distal
Rr374094	regulatory region 374094			734 bp upstream
Rr567481	regulatory region 567481			within coordinates
Rr567482	regulatory region 567482			781 bp proximal