rs29555385 SNP Detail

Summary

• ID
  rs29555385
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69762469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACTCAG GAGACAAGAG
  GTTGAAAGTT GAATGATGGA ACTCACAGTC AAACCAGGCT CATGTGGGCC GGTCCATTTC
  ACTCTATACC TTTGTTCAGC TTTATGAATG AAGGGCATTC GTTGTTACCA CCCTGCCTCA
  TCATTGTGAA AGGTAGAAGA ACTGTATCAT GGACTACTAC CACAAAAACT GTTCTATACA
  W
  GGTTGTGAAC AAACTACAAC CCTTGTTGTA TTTACATCTC CCTAGCTGAA ACCCATAGGC
  CAAGAGGGGA AAGGGCTACA GACCACATTC CCTCCAGTTG GTTTGTGGGT GGGCATTCCT
  GTTTGATCTT TATTTCTAAC GGACAGATGA ACTCAGACTC CCATCTTCTT CTTGATGAAA
  GTCTGATGGG AAAGGCCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39587941	mCV22676827	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss147387947	ENSMUSSNP3716417	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29555385					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69762469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			967 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant