rs29554405 SNP Detail

Summary

• ID
  rs29554405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:77194951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATG AAAAACAGCA TTGGTGAAAA
  Y
  GAGCCCACTG TAATCATGTT TCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss39088213	mCV24822579	ABI	CRAMUS_MOUSE	f	SNP	T	T				C		T
ss49119527	NES12425969	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		C	T	T		C	C		T
ss144698301	ENSMUSSNP6249510	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss324446868	CHEV_13_77186093	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29554405					SNP	T	T	T	T	T	C	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119527	NES12425969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77194951 () rs orientation: forward

Symbol	Name	Function Class
Rr482873	regulatory region 482873	1066 bp distal
Rr482874	regulatory region 482874	1522 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	Intron
Tssr123272	transcription start site region 123272	573 bp downstream
Tssr123273	transcription start site region 123273	793 bp downstream