rs29552995 SNP Detail

Summary

• ID
  rs29552995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTGGAAG GGAAGGAGAG AGGGAGGGAG GGAGGGAGGG
  GGAGAGGGAG GAAGAGGAGG AGGGAGGGAG GGAGAAAGGG AGGGAGGGTG GCCTAAGCAC
  W
  GGGCAGGGCA GGTGAATTTC TGTGAGTTCA AGGCCAGCTT GGTCCACAGC AAGTTCCAGG
  CCACCTGAGG CTACACAGGA AGATTCTGTC TCAAGAGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45334886	mCV23122692	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs29552995					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340532 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	259 bp proximal
Rr564347	regulatory region 564347	831 bp proximal
Rr564348	regulatory region 564348	1225 bp proximal
Rr564349	regulatory region 564349	1985 bp proximal
Tssr632	transcription start site region 632	1403 bp upstream
Tssr19934	transcription start site region 19934	453 bp upstream
Tssr19935	transcription start site region 19935	1363 bp upstream
Tssr26038	transcription start site region 26038	438 bp upstream
Tssr26039	transcription start site region 26039	1069 bp downstream
Tssr26040	transcription start site region 26040	1102 bp downstream
Tssr26041	transcription start site region 26041	1119 bp downstream
Tssr26042	transcription start site region 26042	1164 bp downstream
Tssr26043	transcription start site region 26043	1227 bp downstream
Tssr26044	transcription start site region 26044	1302 bp downstream
Tssr26045	transcription start site region 26045	1680 bp downstream