rs29549664 SNP Detail

Summary

• ID
  rs29549664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54624172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCAGTTG AAAATATAGA
  CAGGGCTGGT GAGATGGCTC AGGGGTTAAG AGCACCGACT GCTCTTCCAA AGGTCCTGAG
  TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCATCTG TAATGAGATC TGACGCCCTC
  TTCTGGTGTG TCTAAGACAG CTACAGTATA CTTACATATG ATAAATAAAT AAATATTTTT
  W
  AAAAAAAGAA AATATAGACA GGCCTTCACA CAATGTGAAG AACATTTGGA TGTTATGAGC
  CACTTCAAGG CAGTGGGGTG GGGGTGGGGA AGGGGGACGG TCATCAGTGT CATCATCTGG
  AGGACTTTCA CCTTGGGCAG TGCAACCTGC TAGTTTAGAC ATTTTTCCAG TGACTTTTTT
  ACAATGTGCA CACTGATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss39087170	mCV25044273	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29549664					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54624172 () rs orientation: forward

Symbol	Name	Function Class
D13Mit54	DNA segment, Chr 13, Massachusetts Institute of Technology 54	1825 bp proximal
Rr403785	regulatory region 403785	178 bp downstream
Rr480227	regulatory region 480227	768 bp distal
Rr480228	regulatory region 480228	238 bp distal
Rr480229	regulatory region 480229	50 bp distal