rs29549041 SNP Detail

Summary

• ID
  rs29549041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG ACAGAGAAGC GGGCAGGCTT
  Y
  CAAGTGACCC CACCTACCTG CCGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39086478	mCV23729255	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss145068551	ENSMUSSNP5197089	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss324503041	CHEV_13_100199149	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29549041					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565702 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Intron
Tssr4149	transcription start site region 4149	398 bp upstream
Tssr123695	transcription start site region 123695	1856 bp upstream
Tssr123696	transcription start site region 123696	697 bp downstream
Tssr123697	transcription start site region 123697	887 bp downstream
Tssr123698	transcription start site region 123698	1018 bp downstream
Tssr123699	transcription start site region 123699	1109 bp downstream
Tssr123700	transcription start site region 123700	1134 bp downstream
Tssr123701	transcription start site region 123701	1192 bp downstream
Tssr123702	transcription start site region 123702	1212 bp downstream
Tssr123703	transcription start site region 123703	1264 bp downstream
Tssr123704	transcription start site region 123704	1315 bp downstream
Tssr123705	transcription start site region 123705	1623 bp downstream
Tssr123706	transcription start site region 123706	1841 bp downstream