rs29548192 SNP Detail

Summary

• ID
  rs29548192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134341372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TGAGGCAAGA TTCCCAGGGA
  R
  CAAGCAACAA AGAAGCCCGA GGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45832834	mCV23023572	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss144503840	ENSMUSSNP6467543	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321695454	CHEV_5_134788388	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29548192					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134341372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			875 bp proximal
Gm71761	predicted gene, 71761			853 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			948 bp upstream
Rr621987	regulatory region 621987			151 bp distal
Rr621988	regulatory region 621988			93 bp proximal
Rr621989	regulatory region 621989			1247 bp proximal
Tssr49086	transcription start site region 49086			1128 bp upstream
Tssr49087	transcription start site region 49087			1155 bp upstream
Tssr49088	transcription start site region 49088			1461 bp upstream
Tssr53628	transcription start site region 53628			27 bp downstream
Tssr53629	transcription start site region 53629			697 bp downstream
Tssr53630	transcription start site region 53630			1269 bp downstream
Tssr53631	transcription start site region 53631			1888 bp downstream
Tssr53632	transcription start site region 53632			1925 bp downstream
Tssr53633	transcription start site region 53633			1938 bp downstream
Tssr53634	transcription start site region 53634			1967 bp downstream
Tssr53635	transcription start site region 53635			1996 bp downstream