rs29547527 SNP Detail

Summary

• ID
  rs29547527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78916373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATATGCAAGG ATTTAGTGAG CCACTTCATG TAGGTCACTC TAGTTGGAGG AGTTAGCTCT
  GTCCTGAGAC CTGAGAGAAA GAAGTCTTGG CTTTAACTCT TAGGTTCCTT CCCAGTAAGT
  TAGTAGAATA CGACAAAGTC TCTTTTTCTC CTGAAACTTA AAGCACACAT ATCTGCTGTA
  TAGACAGCAT CCTTTCACTT CTGCAGACTC AGGAAATACC CACTCATTAG GCATTTTACT
  AGATCCTAGT GATGCATAGC TTGAATAATT ATTCAGTTTT TTTTTTGTTG TTGTTGTTGG
  K
  TTTTTTTTTT TTTTTTTTTT TTTTTTTGAG ACAGGGTTTC TCTGCATCAC CCAGGTTGTC
  CTGAAGCTCA CTCTGTAGAC TAGGCTGGCC TCGAACTCAG AAATCTGCCT GCCTCTGCCT
  CATGAGTGCT AGGATTAAAG GCATGCACCA CCATGCCTGG CTACAGCCCA GGATCTTATT
  CATTAGTGTA GACATGGTGC AGACAACAAG CAAGCATAGT AATCCAGGCA CCAACACAAA
  GATTGTCGTA AATGCAGTTA GAGTCGACAT GCCCAGAAAT CAAAAAAGAA AGTGAATTTA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45333946	mCV23806986	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss146783751	ENSMUSSNP7114684	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29547527					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78916373 () rs orientation: forward

Symbol	Name	Function Class
Rr559926	regulatory region 559926	1093 bp proximal
Rr559927	regulatory region 559927	1127 bp proximal
Rr559928	regulatory region 559928	1398 bp proximal