rs29547496 SNP Detail

Summary

• ID
  rs29547496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134344985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA AAGAACAACT TGCTCTTTGC
  M
  CCCGGATTTC ACTGCTCTTT GGAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45831149	mCV23023557	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss144503858	ENSMUSSNP786801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C		A
ss321695462	CHEV_5_134792001	CHEVERUD	SCREENING_POP	f	SNP					A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29547496					SNP	C	A	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134344985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	973 bp distal
Gm71534	predicted gene, 71534	467 bp downstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr621989	regulatory region 621989	1866 bp distal
Rr621990	regulatory region 621990	1319 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	387 bp distal
Tssr1657	transcription start site region 1657	1173 bp upstream
Tssr49089	transcription start site region 49089	1139 bp downstream
Tssr53631	transcription start site region 53631	1707 bp upstream
Tssr53632	transcription start site region 53632	1679 bp upstream
Tssr53633	transcription start site region 53633	1658 bp upstream
Tssr53634	transcription start site region 53634	1632 bp upstream
Tssr53635	transcription start site region 53635	1583 bp upstream
Tssr53636	transcription start site region 53636	1560 bp upstream
Tssr53637	transcription start site region 53637	1455 bp upstream
Tssr53638	transcription start site region 53638	1410 bp upstream