rs29543317 SNP Detail

Summary

• ID
  rs29543317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96592156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAACAAG AACAGAATGT
  ATCTTTATCT AGCTAGTCCT TTCCTCTGTC TGTTGACGTA ATCTCAAATA GATCTCAAAC
  AACCTTCTTG TTGTCCCAAT GTTTGATTCC ACAAGGTGTC TCTGTATGTA GCATTTTCAA
  AAGAGAAAGA ACTTGAATGA CTTTTCTTTC TCTTTATACA ATTATTCTTG TCAGCATTTA
  K
  CCTGCTACTT GAAGTATAAC TGTATGTCTT ACAAGGTTCT CCTGAATTAT TTTGCCTTCC
  TCCAATGACA ATTTTGTTTT AATTTTTAGC TAGATTTATG TGTTTTCATC ATATTGTTTC
  TGCTCTGTAC ATCTGAAACA TCAGTCTTTA AAATCACTGG AGATACTATG CAGTAAAAAC
  TGGAGACCAC CTTTTTAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45331871	mCV24364615	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss146981845	ENSMUSSNP1712267	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29543317					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96592156 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	1461 bp proximal