rs29542283 SNP Detail

Summary

• ID
  rs29542283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134341422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGAGCTTT GTTCGGTACA CTACTTACCT AACAAGCACT AGGTCCTGGG TTACTCCCAT
  AATGGTAGGC ATGGATTTTA GCAACCCCTT GCCTAAGGAT GACCCAAGGC TAACAAGCAA
  TTCAGAAGGG GGTGGGTAAC CAAAAACAAC TGGTGACCCC CCCCCCCAAC ATAAAAGAAA
  GGCCTTACGG AAATGACTGC GGACAGAAAG TTTTTTGTGC CTCCAGGGTG TGAGGCAAGA
  TTCCCAGGGA GCAAGCAACA AAGAAGCCCG AGGCAACTCT CAAAAAAAAA AAAAAAAAAA
  R
  AAAAGAAAAG AAAAAGAAAA AGAAAGAAAA GCCTGCTATA GGAAATACCA ACCACCCCAA
  ATCCCAAGCC AGATGTTTAT GGGTACTGTA CCTGCACCTT ATTTACACTG CACCCCCTTA
  TTTACAAACT AACTTTGCCC AGGAAACCAG GCAGGCTGGG CCAGCACAGC AGCCGGAAAA
  GATAGCCGGC CTTGCACCTC ATCCCCTGTT CCCCAAATCG GCGGGCACTC CACCAGCACC
  ATCTCAGATC TGCACTCTCA GCAGCCAAGG AGCACAAAGC CATAAGGCAA GGAGGGGGTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45830504	mCV23023568	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29542283					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134341422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			825 bp proximal
Gm71761	predicted gene, 71761			803 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			898 bp upstream
Rr621987	regulatory region 621987			201 bp distal
Rr621988	regulatory region 621988			43 bp proximal
Rr621989	regulatory region 621989			1197 bp proximal
Tssr49086	transcription start site region 49086			1078 bp upstream
Tssr49087	transcription start site region 49087			1105 bp upstream
Tssr49088	transcription start site region 49088			1411 bp upstream
Tssr53628	transcription start site region 53628			19 bp upstream
Tssr53629	transcription start site region 53629			647 bp downstream
Tssr53630	transcription start site region 53630			1219 bp downstream
Tssr53631	transcription start site region 53631			1838 bp downstream
Tssr53632	transcription start site region 53632			1875 bp downstream
Tssr53633	transcription start site region 53633			1888 bp downstream
Tssr53634	transcription start site region 53634			1917 bp downstream
Tssr53635	transcription start site region 53635			1946 bp downstream
Tssr53636	transcription start site region 53636			1990 bp downstream