rs29542041 SNP Detail

Summary

• ID
  rs29542041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157150700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCCAGAT CTTACTGGTT GGAAACAACC AAGGTTTTTT
  TGCCTACAAC AGGAGTATTT AGTGAGTCAG TTGGAGGCTC TGTTTCATGT CATCTTATCA
  R
  GAAGCCTGAC TAGGAGTAAG CCTGTGTCTG GACATCATTT GTGTTCTTAA GACTTCCACA
  AAAAATAATA ATATAGTCTC CTTCTCCTCA CATTTATGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45330577	mCV24816099	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148096474	ENSMUSSNP2581708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320585491	CHEV_2_157134516	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29542041					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157150700 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rpn2	ribophorin II			Intron
				Noncoding-Transcript-Variant
Rr568466	regulatory region 568466			1600 bp distal
Rr568467	regulatory region 568467			582 bp distal