rs29541868 SNP Detail

Summary

• ID
  rs29541868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142093367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCGCATTG GGAAGCCCGC
  ACAAGCTTCT CATTACACAT TTTAATCTTC CCTTCGGATC GATGTCCCTC ATGCTTGGCC
  CTGCTCTCTT CCATGCCCTT ATTATCATAA TTCACCCATA ACCTTAAAAA CAGGGCTTCT
  CTCGAGCCAC GTTCTCCTCC TCCTCTTGAG TAAGCGCATT CATTCTTTGC AAACACACAC
  Y
  GCAGCCTCCT GACCCTGGCT CGCTGAAATC CCACTCGCTA ATGCTTCTGA TCCAGCCGCA
  ACCATAATTA CATAAGAAGC CTTATCCTCG GAAATGCTCT CAGCTCTGAA CACCATCCAT
  CATTATTCTC TGAAAATGCA AGAACTATTC CACAGCTGCC TCTCCCATCC AGGATGCTCA
  GGAAAGAGAC TGCCGAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss45829632	mCV25013596	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss51529104	NES14869837	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	T	C
ss144586625	ENSMUSSNP2263074	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs29541868					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529104	NES14869837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142093367 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	1819 bp upstream
Sdk1	sidekick cell adhesion molecule 1	Intron