rs29540812 SNP Detail

Summary

• ID
  rs29540812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127470939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTTT CTCTCTCTTT
  TTTTTTTTTC AAATCCACCT CCCTTGTCTT GTTTTTGGTT ATATATATAT TTTAAAGATA
  GGGGCTTGTG GTGGTGTGTT TATGCTCAGC CCAGGGAGTG GCACTATTAG AGGGTGTGGA
  CCTGTTGGAG TAGGTGTATC ACTGTGTGTG TGGGCTTTAA GACCCTCATC CTAGCTGCCT
  R
  GAAGCCAGTA TTCTGCTAGC AGCCTTCAGA TGAAGATGTT GACTCTCAGC TTCTTCTGCA
  CCATGCCTGC CTGGATGTTG CCATGCTCCT GCCTTTATGA TAGTAAACTA AACCTCTGAA
  CCTGTAAGCC AACTCCAGTG AAATGTTGTC CTTATAAAAG TTGCCTTTGT CATGGCGTCT
  GTTCACAGGA GTAAAACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45333195	mCV25215135	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320500460	CHEV_2_127454755	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29540812					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127470939 () rs orientation: forward

Symbol	Name	Function Class
Rr564574	regulatory region 564574	563 bp distal