rs29539477 SNP Detail

Summary

• ID
  rs29539477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178306444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCCTTGG TGGGTTGAGA CTTTACTGGG ATACAGCTTT
  GGGGTTCCCC ACACCCACTG ATGCTGTGTA GGCAAGCCAA AAGACTCATT GGTCCCTTAA
  M
  GTTGATGTTG GTGGAGTCCT TACTCTGGTG TCGAGTCTGG GGTAAAGACA TGTCTATTCA
  CATCTCCATA GGCAGGAAAA CCTAGGGCAG CAGCAGGGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45332917	mCV23363341	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss148367476	ENSMUSSNP1672856	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29539477					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178306444 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Gm74926	predicted gene, 74926	1455 bp downstream
Rr397573	regulatory region 397573	332 bp upstream
Rr572447	regulatory region 572447	1865 bp distal
Rr572448	regulatory region 572448	232 bp proximal
Rr572449	regulatory region 572449	526 bp proximal