rs29539464 SNP Detail

Summary

• ID
  rs29539464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101468603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTCCCA CAGGCACGGC
  CAGAGGCCTG ACTCTCGGAT GATGCTATTT CTCCAGTTGA CAACTGAGAC TAAGTATCAC
  AGTCACCAAG TTCATTTTTA TGTCCTTCAA ATAAGGGAGA TAATGTTAAG TATGGGCAGT
  CAACATAATT GATATGAGAT GATATAGCAC CAATATAAAT CACAACGCCT GTTATTTTCA
  R
  ATCTTAAACT TTTATTCCAA ATACTTAAAC ACAAAATTGT GAAATCAATC ATAATGCTAA
  AAAGTAAAAT ATGAAAATAA GTATTTGAAC TCATGTTCTT CCATTTGAAA ACATTTAACA
  TGGAAATATA GGTCCTCAAA TCAAATAGTA CATTGCATCC TGGTGTCTAA ACCTCCCCTC
  AGAGAGGAAA AGTAGACTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45330733	mCV22318660	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320429654	CHEV_2_101478415	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29539464					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101468603 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	1353 bp proximal
Tssr25364	transcription start site region 25364	1844 bp downstream
Tssr25365	transcription start site region 25365	1968 bp downstream