rs29538895 SNP Detail

Summary

• ID
  rs29538895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102278083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATGCTT CGTATGTGTA
  TGTTTTATAT GTTAACATTT AAATCCCACA GTGCACGGAC TGAATCTCCA TTTCACAGAT
  GAGGGAACTA AGTTAAATGA TGTGCTGAAG GAAAGTATGT GAAGGGCAGG ATTCAAGATT
  ATAGTCTCCC TGCAGAACCC ATTACTTTTT TCCCAAGTCA TCCCCAGTTC AAAAAATGAA
  Y
  TGTCCCAAGG AGCATTGACC ATAGCACAAT CTTAATGGAT CTTTCATTGC CCCAGTCTAC
  CGACTAGCCA CAAGGAATAC CAACAGTTAA AGTCCTTTAT CTGTACCTTT GTCTGTAATT
  ATGCCTTGGT TCCCTTAACA ACGCTACCAT GTAATTAAAC CGATTTTGCC AACGGGCAGC
  TATGCTTCAC TAGAGAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45329465	mCV23728275	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147112258	ENSMUSSNP4660310	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320437731	CHEV_2_102287895	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29538895					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102278083 () rs orientation: forward

Symbol	Name	Function Class
Fjx1	four jointed box 1	1628 bp downstream
Rr561693	regulatory region 561693	86 bp proximal