rs29538614 SNP Detail

Summary

• ID
  rs29538614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102388333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTTCA GGTCTTCTTG
  GCCTGGCTTT CTGCCACTAG GGTGTGTACG GTTCTTTTCC AAATGGTGCC TAGAATCTCT
  TCTGGGAAAG CTTGGCTCCC TTGGCTCATG TGTCAGAACA TAATACTAAG TGTCACAAGC
  CTTATAGAAA TGCGACACAA ACTTCAATAG ACAAAAATGT TCAGATTGGT GACTGTGATG
  R
  ATCACTAGAC TCCACAATAA AGTTGGAATT ATAGCAAGAG AAGAGTCTAG CATTTGTCTT
  TGTCACAAAT AGCCTTCACT TGAGGAATTA TTCCTGCCTC TTATGTTCAT ATTCATGTAT
  CCGTTCAGCA ATATTTAGCA AGAACCCATC AGGCACCAAG AATGTTTCTA GGTGCTGGGA
  TACCATGATA AGTAAGACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45332999	mCV23730702	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147115643	ENSMUSSNP1913361	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438850	CHEV_2_102398145	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29538614					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102388333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			950 bp proximal