rs29538370 SNP Detail

Summary

• ID
  rs29538370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152498048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACATAA GATAAAATAT
  ATAAATCTTG AAAATAAAAT TAAATATTAA AAAAATAAGT AAATAAACAA CAACAAAAAA
  AAGCAACTTG AAAAGATAGA GAGAGATGGC TCAATAGACA CCTATGTTCA ACCTCCAAAA
  GCCATGTGTA TCAGTCACGG TTGTCAAGAG GATAAGAACT TATTGAATGA ACTGCGGGGG
  R
  AAGGGGGGGC TAGAATGGCT TATAGGCTGT GGTCAAGCTA GCCTAACAAT GGCTGTCTAC
  CAAAGGAAGG TCCAAAAATC CAGTAGTTTT TCAGTACACA AGGCTGGATG TCTCAGCTGG
  TCTTCAGAAT CGGCCAGAAT CCTGAAGAGG TAGGCTCTCG TGCCAGTGAT GGAATGGACT
  CGCCAGCAAG AACTGCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45328961	mCV27575973	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss147970986	ENSMUSSNP4529430	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320562939	CHEV_2_152481864	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29538370					SNP	G	G	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152498048 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1798 bp upstream
Rr567411	regulatory region 567411	1787 bp distal
Rr567412	regulatory region 567412	1286 bp distal
Rr567413	regulatory region 567413	253 bp distal
Rr567414	regulatory region 567414	1330 bp proximal
Rr567415	regulatory region 567415	1464 bp proximal
Tssr26849	transcription start site region 26849	1869 bp upstream
Tssr26850	transcription start site region 26850	1862 bp upstream
Tssr26851	transcription start site region 26851	1824 bp upstream
Tssr26852	transcription start site region 26852	1795 bp upstream