rs29538224 SNP Detail

Summary

• ID
  rs29538224
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164231703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT GCAACCCGCA CCTCCAGCCC
  M
  AAAGGATATG GTTCTGCGTC AGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45331502	mCV22941072	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss148224354	ENSMUSSNP188171	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss320605749	CHEV_2_164215519	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29538224					SNP	A	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164231703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12651	CpG island 12651	within coordinates
Matn4	matrilin 4	Intron
Rr569594	regulatory region 569594	797 bp distal
Rr569595	regulatory region 569595	184 bp distal
Slpi	secretory leukocyte peptidase inhibitor	688 bp upstream