rs29538175 SNP Detail

Summary

• ID
  rs29538175
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69414424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAA AACTTGAAAA ATGCTTCCCA
  S
  TTTTTCTCCG TAATTCACAT GGATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45329636	mCV22345820	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss146729491	ENSMUSSNP1416532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss320331722	CHEV_2_69422137	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29538175					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69414424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	1123 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	Intron
Rr558427	regulatory region 558427	143 bp proximal
Rr558428	regulatory region 558428	1939 bp proximal
Tssr24442	transcription start site region 24442	1941 bp downstream