rs29537302 SNP Detail

Summary

• ID
  rs29537302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121129001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGGCTGG AGGAGGCAGT TCCCAGGCCT CCCTTAGTGG
  CATCCTAGAT GACTGGGTAC CCTGTACCCC ATTTTCTGAT CATTTGTTTT TCCTCCCCTG
  Y
  GCCCCCCCCC CCAGTACTTC TCATTTTAAA TCAATACCTA CTGATTTCAG TACACATGCC
  TACATCTCTC CCTCAGGCCA GAGGACCCTC TGCCACCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45332694	mCV23082154	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29537302					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121129001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr563802	regulatory region 563802			34 bp distal
Tssr19741	transcription start site region 19741			72 bp upstream
Tssr19742	transcription start site region 19742			963 bp upstream
Tssr19743	transcription start site region 19743			1843 bp upstream