rs29536904 SNP Detail

Summary

• ID
  rs29536904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153080778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAACGAG ATTCATTCTC TTAACTTGTA AATAAATGTT
  TTCTAGAGGA CGAAGCGAAA AGGTACCATT GAGAGTGACA TAAAATGTGA ACATGCAGAA
  Y
  CCATGAGGGC CACATCTCTG CTGCCCCTCT TCACAGTGCT AAGTATAACT TCTTTTTCCC
  TCTTAGTGTT ACTTCTCATG CCTCAAAGTC AGTTTCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45329615	mCV23160537	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss147988397	ENSMUSSNP5282554	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29536904					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153080778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	1969 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Rr567587	regulatory region 567587	92 bp distal
Rr567588	regulatory region 567588	98 bp proximal
Tssr26894	transcription start site region 26894	924 bp upstream