rs29536846 SNP Detail

Summary

• ID
  rs29536846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163936736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCT GTTTGCCTCT GCCGCCTTGG
  R
  TGCTGAGATT AAAGGCTGGT CTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45331687	mCV23179556	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148219249	ENSMUSSNP713308	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320604780	CHEV_2_163920552	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29536846					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163936736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569556	regulatory region 569556			1957 bp distal
Rr569557	regulatory region 569557			461 bp distal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant