rs29535030 SNP Detail

Summary

• ID
  rs29535030
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCATGG GCATTTATTT
  GTCAACTAGA CTCTGCCAGG AATGAAGTTA TTCATGGACA TCTTACTAAA CTCATGGGTA
  AATCAGAGTC AGGATGCAGA CTCTTCTATG AGGTAACAAC TCAACAGACT CTCTCCTAAG
  CACAAACTGC AGGAAGTGTG GTGTCCACAT GGAGAGAAGG AAGATTCTGA TGTCACTAAA
  R
  TGATTTGACT TTAATGGTAT GTAAGTAATA AGCTTTAACT TTCAAATGTA TTGAGTCATT
  ACTTGCAGTG AAGTCAGTAT TCAGGTGTGC CCATCCCCTC CCCTGCTAGC TCTGTGCTCT
  TCGGAGTTGT TGCCCCTGTG TCCCATGTGC CTCTCTTCTG TGGAAGTGTA ACTTAAATGC
  AGAGAGAAGC TAACGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45329904	mCV22279945	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147540720	ENSMUSSNP4078573	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320500680	CHEV_2_127582134	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29535030					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598318 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	768 bp proximal
Tssr26143	transcription start site region 26143	680 bp upstream