rs29533739 SNP Detail

Summary

• ID
  rs29533739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125698343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAATCAAT TAACTAAAAC GGAATCATGA AGTTCAGCCT
  CCAACTCATT ATGTGGCCAA GAATGGCCTT GAGCTTCTGA TGCTTCGTCC TCTCTCGACC
  Y
  GAAGTGATAC AGGACGCTGC CACATCCAGT TCTTCAGTGC TAAAGACCGA GCCCAGGGCT
  TTTGGAATGT GAGGCCAGCA CTCTACCAAG TGAATGAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45329494	mCV23888047	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss147488938	ENSMUSSNP785207	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29533739					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125698343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			Intron
				Noncoding-Transcript-Variant
Rr564285	regulatory region 564285			1488 bp proximal
Rr564286	regulatory region 564286			1892 bp proximal