rs29529288 SNP Detail

Summary

• ID
  rs29529288
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169507441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAC ACACACACAC ACACACACTC
  W
  CACACACACT CACGTACACA CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45328281	mCV23016952	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss148289172	ENSMUSSNP2100682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320613648	CHEV_2_169491021	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29529288					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169507441 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	89 bp downstream
Rr571229	regulatory region 571229	819 bp distal
Rr571230	regulatory region 571230	698 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	583 bp downstream