rs29528579 SNP Detail

Summary

• ID
  rs29528579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99565714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GCAGGCTTTC AAGTGACCCC
  R
  CCTACCTGCC GTTGCGGTCT TCGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39082056	mCV23729254	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss145068556	ENSMUSSNP765053	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324503042	CHEV_13_100199161	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29528579					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99565714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map1b	microtubule-associated protein 1B			Intron
				Splice-Site
Tssr4149	transcription start site region 4149			386 bp upstream
Tssr123695	transcription start site region 123695			1868 bp upstream
Tssr123696	transcription start site region 123696			685 bp downstream
Tssr123697	transcription start site region 123697			875 bp downstream
Tssr123698	transcription start site region 123698			1006 bp downstream
Tssr123699	transcription start site region 123699			1097 bp downstream
Tssr123700	transcription start site region 123700			1122 bp downstream
Tssr123701	transcription start site region 123701			1180 bp downstream
Tssr123702	transcription start site region 123702			1200 bp downstream
Tssr123703	transcription start site region 123703			1252 bp downstream
Tssr123704	transcription start site region 123704			1303 bp downstream
Tssr123705	transcription start site region 123705			1611 bp downstream
Tssr123706	transcription start site region 123706			1829 bp downstream