rs29526478 SNP Detail

Summary

• ID
  rs29526478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62451352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTTTC CTCTCTCTCT
  GATGTAATCA ATATAACCCA ATTATGTAAT CAATATGACC CAATTATATC ATCAGTATAA
  CCCAGATTAT AATCAATTAA ACCCAATAAT GAAAATGGTA TTTTACATAG TGTCAGGCTT
  TGAAATACAC TGCACATTCT TTTAAAACAA AAGCCAGTTG AAGATTTTTA AATTATATTA
  Y
  GACATGTAAA TGGTCAAAGA TGCAATGAAA TAGAGTTTAA ATAATAATAT TCTATTGGAA
  CTACACCATG TGGCAAATTT CATTCTCACA TGGATTTTGA CAGCTGAGTT ATTCTTGGAG
  AGGAAAGGTC TGCCGCTGCA TGTGTTTGAA ATCGACAAAG CATCCTCTTA CCTATAGTGT
  GTAACCACGG GGGAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45328184	mCV25209178	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss146703099	ENSMUSSNP3754322	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
ss320320718	CHEV_2_62459065	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29526478					SNP	T	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62451352 () rs orientation: forward

Symbol	Name	Function Class
Gm39839	predicted gene, 39839	within coordinates
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557888	regulatory region 557888	1514 bp distal
Rr557889	regulatory region 557889	676 bp distal
Tssr24306	transcription start site region 24306	1143 bp downstream