rs29524927 SNP Detail

Summary

• ID
  rs29524927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165836905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GGATTGTAGG CAAAAGGGGC
  R
  GCTCTAATTG TAAGCAGTTA CGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45328713	mCV23746329	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148248051	ENSMUSSNP3212121	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320609301	CHEV_2_165820485	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29524927					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165836905 () rs orientation: forward

Symbol	Name	Function Class
Ncoa3	nuclear receptor coactivator 3	Intron
Rr570097	regulatory region 570097	860 bp distal
Rr570098	regulatory region 570098	1968 bp distal
Rr570099	regulatory region 570099	1459 bp distal
Rr570100	regulatory region 570100	415 bp distal
Rr570101	regulatory region 570101	1060 bp proximal
Tssr27667	transcription start site region 27667	1242 bp upstream