rs29524324 SNP Detail

Summary

• ID
  rs29524324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCCTCTTTG GAGTCCCTTT GATTCCCTAT TTCCTCAGAT TCCCGCTGCC TCCCAGCCCT
  GGGGAGGCCT GGAGCAAATG GCTGCAACTC ACTCGGGCCT CATTTTCACC TACCACCCCT
  CCGCAACTTA GCAGCCTTTC CCCCAAGAGG AGAGGGTTAG AAACCCAAGG CCAGACTTAT
  CACAGCCCCA GGCTGACAGG TGGAAAAACA CACAAGCCAG GAGTCGGTAT GCTTGCAGGT
  GAAAGCCCCA ACTCCCAACA CGGCCAGGAA CGCGGCCCGC CACCGCGCCA CCGCCCCCCC
  Y
  CGCCCCCCCC CCCGCGACCC CGATCTGTTC CAAGCTGGAC TGAAGCATGG GGCTGAAGTT
  GTAGGAAGTC TGGCCCTTAG GCCAGCGGAT AGACTACCCT ATTTTGTAGT GTGAAATGTT
  AAATTCTCCC CACAATTGGA AGGTGGATGT AAAGAGTGGA GACAAGAGAC GGGAATTCAA
  TAGTAAGTCT AAAAAGTCTA ATAGGATCTG GGGTGGGAAG AGCAAGCATG CACGGTAAAG
  AATTACGAGC ACGTTATTTG AGTCTCTAAG AGACCCCATG GGGGGAAGAG GTAGGGAGAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45328152	mCV23160831	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29524324					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	503 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1209 bp upstream
Rr567587	regulatory region 567587	1558 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1092 bp proximal
Rr567590	regulatory region 567590	1632 bp proximal
Tssr20880	transcription start site region 20880	591 bp upstream
Tssr20881	transcription start site region 20881	605 bp upstream
Tssr20882	transcription start site region 20882	1128 bp upstream
Tssr20883	transcription start site region 20883	1178 bp upstream
Tssr20884	transcription start site region 20884	1283 bp upstream
Tssr26895	transcription start site region 26895	1019 bp downstream
Tssr26896	transcription start site region 26896	1034 bp downstream
Tssr26897	transcription start site region 26897	1078 bp downstream
Tssr26898	transcription start site region 26898	1173 bp downstream
Tssr26899	transcription start site region 26899	1385 bp downstream