rs29523492 SNP Detail

Summary

• ID
  rs29523492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162358057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA CCCGGCAGGG TCCTGACAGT
  R
  GAGGGATGGC AGGCACAGGC CACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45326565	mCV23583854	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148190333	ENSMUSSNP2284318	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320600797	CHEV_2_162341873	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29523492					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162358057 () rs orientation: forward

Symbol	Name	Function Class
Ptprt	protein tyrosine phosphatase receptor type T	Intron
Rr569207	regulatory region 569207	984 bp proximal