rs29523272 SNP Detail

Summary

• ID
  rs29523272
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125701543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTA ACAGTTGGTG ACAGATTTTT
  W
  AAAAATGCAT TGTCGCAGAA AACCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45325477	mCV23888330	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss147488960	ENSMUSSNP1230296	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320498096	CHEV_2_125685359	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs29523272					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125701543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cops2	COP9 signalosome subunit 2			541 bp upstream
Cpgi12203	CpG island 12203			227 bp distal
Galk2	galactokinase 2			Intron
				Noncoding-Transcript-Variant
Rr367292	regulatory region 367292			371 bp downstream
Rr564285	regulatory region 564285			1691 bp distal
Rr564286	regulatory region 564286			595 bp distal
Rr564287	regulatory region 564287			39 bp distal
Tssr19907	transcription start site region 19907			398 bp downstream
Tssr26026	transcription start site region 26026			596 bp upstream
Tssr26027	transcription start site region 26027			402 bp upstream