rs29522613 SNP Detail

Summary

• ID
  rs29522613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101865364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGTTTA TGGCATAATA
  AGGCATCTAA GGCATCTGGC CTTATGCTTT TTCTTTTCTT TCTTTTTTTT TTTTTTTTTT
  TTTTTGGTTT TTTGAAACAG GGTTTCTCTG TATAGCCCTG GCTGGCTGTC CTGAAACTCA
  CTTTGTAGAC CAAGCTGGTC TTGAACTCAG AAATCGGCCT GTCTCTGCCT CCCAAGTGCT
  R
  GGATTAAAGG CACGAGCCAC CACCGCCTGG CCCTGGCCTT ATTCTTGAAT TCAAGATTGT
  TGTTAAGCTT TTTATTCTCA TAATAACTGA GGCTAGTTCA CTTTTCTCTT ACATATGGGG
  AAACGAAGGC ACAGAGAGAG ATATGAAAGG AACTCTCCCA GGATTAGACA GCATGTACTG
  TATAAATCCA AACATATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45327846	mCV25361134	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147097707	ENSMUSSNP1679316	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320433802	CHEV_2_101875176	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29522613					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101865364 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr561613	regulatory region 561613	988 bp distal
Rr561614	regulatory region 561614	224 bp distal
Rr561615	regulatory region 561615	1402 bp proximal