rs29522485 SNP Detail

Summary

• ID
  rs29522485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152661133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCTTTG GGCAATAGGA
  AGCAAATCAC TAGGGGCACA CAGTGGTGGG CACATTCTTT TCCTAGTTCC CTCTCTTGTC
  ACTGGCTTCC TTGATGCCAT AAGATAAGCA ACTCTGCTTC ACCATTTATG GGCCATAAAG
  TTCTGCCTCA CCACTCATAA GTCAGGACAA TGGAGCCAAG GGCAATGAAT TGAAAGCTTC
  R
  AAACAGTGAG CTAAAATGTC TGGGAGCTGA GTGGACAGAC AGATAGATGA TCACATAGAC
  TGATTCAAAG CGCAAGGCAA CTAGCCAGTT CCATGGTGTG AAGCATTGAG ACAGACTGCC
  AACAGAAAGC CTGTAGTCTC ACTCACCACT TGGTGTCCCC ATCCAAGGCA TTCATTAGCA
  TTTACTTATT TAAACTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45325459	mCV27575773	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147974945	ENSMUSSNP103628	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29522485					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152661133 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			1016 bp distal
Rr374094	regulatory region 374094			477 bp upstream
Rr567481	regulatory region 567481			199 bp distal
Rr567482	regulatory region 567482			524 bp proximal