rs29519993 SNP Detail

Summary

• ID
  rs29519993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153081793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGAAACC AATCCAAAAG CATTCTGGCT GGCTGGAAAA
  CAGTAAGAAG GAACGGAGGA ATGGGAAGAG CTGCCCACTT CCCAAGGCCA GCGCGCGCGC
  R
  CACACACACA ACACCCCGGA ATGGTGGGAG AATTAAATTA CAGGGAGGCC TGAGAGTCTC
  AGTGACTTGC ATCATTCCAA GAAACATCAA ACAGGATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45327113	mCV23160809	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss147988411	ENSMUSSNP6355709	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29519993					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153081793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	954 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1660 bp upstream
Rr567587	regulatory region 567587	1107 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1543 bp proximal
Tssr20880	transcription start site region 20880	1042 bp upstream
Tssr20881	transcription start site region 20881	1056 bp upstream
Tssr20882	transcription start site region 20882	1579 bp upstream
Tssr20883	transcription start site region 20883	1629 bp upstream
Tssr20884	transcription start site region 20884	1734 bp upstream
Tssr26894	transcription start site region 26894	1939 bp upstream
Tssr26895	transcription start site region 26895	1470 bp downstream
Tssr26896	transcription start site region 26896	1485 bp downstream
Tssr26897	transcription start site region 26897	1529 bp downstream
Tssr26898	transcription start site region 26898	1624 bp downstream
Tssr26899	transcription start site region 26899	1836 bp downstream