rs29518080 SNP Detail

Summary

• ID
  rs29518080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159428272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATCCCT CAGAACTTTG
  CCCTGCCAGT TTCAGTTGTT CTTTGTATAA ACCCACCGAG TTCACTTCGT ACTGTCAATG
  AGTGCATGGG CACAGGGCCA TTTACTGGAG CAAGGGTAGC CTCTCAGAAA ATATTATTGA
  GCATTATTAT GGATTAAGTT ATAGATTCAA ACTCAAATCC CAGCACCCCA GAATATGATA
  R
  TATTTGGAAA CACAGCCATG ACTGATGTCA TTAGCTAAGA TACACAGCCA TGGCTGATGT
  CATTAGCTAA GATGAGGTCA TTAGGGCTGT CTTCCAGTCT GTTTGTGTAT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGCACTA TTAGGCTTTA TCTCGTAGTT GTGAGTGTTC
  TACTTGCTCC CTAGGTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45325212	mCV22919324	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148134164	ENSMUSSNP2444028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29518080					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159428272 () rs orientation: forward

Symbol	Name	Function Class
D2Mit411	DNA segment, Chr 2, Massachusetts Institute of Technology 411	75 bp proximal
Rr568924	regulatory region 568924	398 bp proximal
Rr568925	regulatory region 568925	448 bp proximal
Rr568926	regulatory region 568926	827 bp proximal