rs29516398 SNP Detail

Summary

• ID
  rs29516398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153082334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCCCCCTC CCCCCCCCCC CCCCGCGACC CCGATCTGTT
  CCAAGCTGGA CTGAAGCATG GGGCTGAAGT TGTAGGAAGT CTGGCCCTTA GGCCAGCGGA
  K
  AGACTACCCT ATTTTGTAGT GTGAAATGTT AAATTCTCCC CACAATTGGA AGGTGGATGT
  AAAGAGTGGA GACAAGAGAC GGGAATTCAA TAGTAAGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45324607	mCV23160833	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29516398					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153082334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	413 bp proximal
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Pofut1	protein O-fucosyltransferase 1	1119 bp upstream
Rr567587	regulatory region 567587	1648 bp distal
Rr567588	regulatory region 567588	within coordinates
Rr567589	regulatory region 567589	1002 bp proximal
Rr567590	regulatory region 567590	1542 bp proximal
Tssr20880	transcription start site region 20880	501 bp upstream
Tssr20881	transcription start site region 20881	515 bp upstream
Tssr20882	transcription start site region 20882	1038 bp upstream
Tssr20883	transcription start site region 20883	1088 bp upstream
Tssr20884	transcription start site region 20884	1193 bp upstream
Tssr26895	transcription start site region 26895	929 bp downstream
Tssr26896	transcription start site region 26896	944 bp downstream
Tssr26897	transcription start site region 26897	988 bp downstream
Tssr26898	transcription start site region 26898	1083 bp downstream
Tssr26899	transcription start site region 26899	1295 bp downstream