rs29510212 SNP Detail

Summary

• ID
  rs29510212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:92268222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TGTTCCCCGG AAGCCCGGTG
  M
  CGAGTGGCCC TCCGAGGGCG CCCGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39080339	mCV24963561	ABI	CRAMUS_MOUSE	f	SNP		A	C					A	A
ss52681580	NES15521843	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	C		A	A	C		A	C		C
ss144931603	ENSMUSSNP1408202	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss324479873	CHEV_13_92901669	CHEVERUD	SCREENING_POP	f	SNP												C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29510212					SNP	A	A	C	C	C	A	C	A	A	A	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52681580	NES15521843	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92268222 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	mRNA-UTR
Rr483653	regulatory region 483653	within coordinates
Tssr4138	transcription start site region 4138	153 bp upstream
Tssr123423	transcription start site region 123423	34 bp upstream
Tssr123424	transcription start site region 123424	84 bp downstream
Tssr123425	transcription start site region 123425	104 bp downstream
Tssr123426	transcription start site region 123426	135 bp downstream
Tssr123427	transcription start site region 123427	163 bp downstream