rs29510101 SNP Detail

Summary

• ID
  rs29510101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55982522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGGTT GCAGCCTATT
  GAGGTTTCTT TGAGGGACGG GGTTGTATGG GAATACTGAC TGCTGGATAG GACATCAGCC
  ACCAGCTACA ATGGATGTAT AGGGCTTGTC TCTCTCCATG GCTGATATGA TCTGTGACTC
  TCCATGCTGT TTTTCACCCA AGTCTGCCAC CATGTTTTCT GATTCCAGAA GAGTGGCTGA
  R
  CTAAGGGAAT ATAGGGCGGC TAAGAAAATG GTAGCGTTTG TCACTCTGCT CTGGAGCAGA
  GGAGGACCCG CTTTTATTTT TCACTCTCCC AGGGCTGCTT TCTTGGGAGA AGGGTGCTGG
  AAACCTGAAA GTTATCAATT GCCTGTGTGT TTCCACAGCG TCCTCAGACC CTACTTTTTC
  TCTCTGGTGG AGGCACCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39078438	mCV25142953	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss149038600	ENSMUSSNP1265769	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29510101					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55982522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5691	CpG island 5691	781 bp proximal
Gm28760	predicted gene 28760	651 bp downstream
Gm47071	predicted gene, 47071	within coordinates
Pitx1	paired-like homeodomain transcription factor 1	Intron
Rr480569	regulatory region 480569	1904 bp distal
Rr480570	regulatory region 480570	1373 bp proximal
Tssr122729	transcription start site region 122729	1362 bp downstream
Tssr122730	transcription start site region 122730	1397 bp downstream