rs29507396 SNP Detail

Summary

• ID
  rs29507396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126339611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCTGATAT CTATGGAGGC CAGAAAAGGG GATGAGAGTC
  CCTGGAACTG GAATGTCAGA TGGTTGTAAA CTGTCCTGTG GGTGCTGGAA ACTGAACCTG
  Y
  GTCTTCACCT GTCCAGCCCA TGCCCAAGTG CTTGAAAGAT TACTGTCACA GCACAGGGCA
  CACGGAAAGA GTCTTGAGGA CAACGGCACT CATAAAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45320875	mCV22622692	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147505012	ENSMUSSNP2286410	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29507396					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126339611 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	1167 bp distal
Rr564346	regulatory region 564346	1180 bp proximal
Rr564347	regulatory region 564347	1752 bp proximal
Tssr19934	transcription start site region 19934	1374 bp upstream
Tssr26038	transcription start site region 26038	470 bp downstream
Tssr26039	transcription start site region 26039	1990 bp downstream