rs29507223 SNP Detail

Summary

• ID
  rs29507223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:96594325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACACATA TGTCTGAGGA
  CTCGCTTCAC TGAAATGGAG AAGCTCATAT TAGGCAGTGG AGACTCCTAC GTTTTAAAGC
  CAACATAGTC ATTCAATTCT AATTAAAACA TTTAAGACCT GTATGACCTC GGTTGGCACC
  TCAGAGTATC AATTTTAGTC ATTGCAACTT ATCTGTTATT TAGTTACAGA CATCTCCTCA
  Y
  TGGACACCTT CTTTGTCCCC AACATAATTC CAACTGCTAT AAATTAGTCA ATACAGATCC
  CTGCTTCTCA CTGAGTTTAT CTTTTGACAC TTTTAGTGCT ATTAAGTAAC TATAAAAATA
  CAATTAAAGC CCCAGCATAA CCTTTGTAGT ACATGCTCAG AGAAATGTTT CTTCTATTTA
  TTTAAACTCT CACTTGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45322180	mCV24364638	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss146981871	ENSMUSSNP6901304	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29507223					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:96594325 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561438	regulatory region 561438	within coordinates