rs29505549 SNP Detail

Summary

• ID
  rs29505549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83881880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA AAGAAAAAAC AGGTAGAAGT
  Y
  TTTTAATATG ATGAAAGTAG AAAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45323155	mCV22541947	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146819819	ENSMUSSNP1893504	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C		C
ss320369222	CHEV_2_83891693	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29505549					SNP	T	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83881880 () rs orientation: forward

Symbol	Name	Function Class
D2Mit382	DNA segment, Chr 2, Massachusetts Institute of Technology 382	880 bp proximal
Rr560221	regulatory region 560221	812 bp distal
Rr560222	regulatory region 560222	195 bp proximal
Rr560223	regulatory region 560223	1152 bp proximal