rs29501604 SNP Detail

Summary

• ID
  rs29501604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102914663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTTGTAT ATAACAGAGC TCCTACCAAA CTGAGCTAAA
  ATACTTGTTT CTGGCTTTTT AAAAATATAT ACAGCAAAGT TAAAAAGAAT AGAATGCAAA
  Y
  TCAAGAGAAG TTTTTTTTTT AAGATTTATT TATTTATTAT ATGTAAGTAC ACTGTAGCTG
  TCTTCAGACA CTCCAGAAGA GGGCGTCAGA TCTTGTTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45319739	mCV24398885	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147130441	ENSMUSSNP619612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29501604					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102914663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr561794	regulatory region 561794			69 bp proximal
Rr561795	regulatory region 561795			177 bp proximal